rs27604272 SNP Detail

Summary

• ID
  rs27604272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGAAGA GCAGAGACCC
  TGAGGGTCTG AGGCTCCGGC TTGCCTGGTG CCCAGCTTAT ATAGCAGCCT TGCCCACAGC
  CCGTCCCGGG GGCCAAGGAA ACATCAAGAC CCTCGGGGAT GCCTACGAGT TTACAGTGGA
  CATGAGAGAC TTCTCCCCTG AAGACATCAT TGTCACCACC TTCAACAACC ACATCGAGGT
  R
  CGGGCTGAGA AGGTGAGTCT GGCCCCTGGC CCGCCCCAGG GTCCCCACCT TTGCTCCTGC
  ACTCTGCCTG GTCTAGCCTG GTCTCTGGGC CCTACTTTCC CCCTATCTTT GTAGGCTTCG
  TACCCTGATT TATGTTCCTT CCCTGTCTGT ACCCAGGGTA AACTACAGCC CTTTCCCAGT
  GGGCTCACGG GCCAGGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786213	NES09121464	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G	G	G	G
ss147736059	ENSMUSSNP2077700	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604272					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786213	NES09121464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	782 bp distal
Gm70184	predicted gene, 70184	1563 bp upstream
Gm70191	predicted gene, 70191	1724 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1824 bp downstream
Tssr40054	transcription start site region 40054	946 bp downstream
Tssr40055	transcription start site region 40055	933 bp downstream
Tssr40056	transcription start site region 40056	912 bp downstream
Tssr40057	transcription start site region 40057	851 bp downstream
Tssr40058	transcription start site region 40058	824 bp downstream
Tssr40059	transcription start site region 40059	800 bp downstream
Tssr40060	transcription start site region 40060	740 bp downstream
Tssr40061	transcription start site region 40061	730 bp downstream
Tssr40062	transcription start site region 40062	99 bp downstream
Tssr40063	transcription start site region 40063	1374 bp upstream
Tssr40064	transcription start site region 40064	1434 bp upstream
Tssr40065	transcription start site region 40065	1449 bp upstream
Tssr40066	transcription start site region 40066	1578 bp upstream
Tssr40067	transcription start site region 40067	1626 bp upstream
Tssr40068	transcription start site region 40068	1678 bp upstream
Tssr40069	transcription start site region 40069	1810 bp upstream
Tssr40070	transcription start site region 40070	1895 bp upstream
Tssr40071	transcription start site region 40071	1919 bp upstream
Tssr40072	transcription start site region 40072	1964 bp upstream
Tssr40073	transcription start site region 40073	1987 bp upstream
Tssr44314	transcription start site region 44314	1 bp downstream
Tssr44315	transcription start site region 44315	1412 bp downstream
Tssr44316	transcription start site region 44316	1495 bp downstream
Tssr44317	transcription start site region 44317	1553 bp downstream
Tssr44318	transcription start site region 44318	1936 bp downstream