rs27604273 SNP Detail

Summary

• ID
  rs27604273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGCTCA CCTCACTCCA
  TCCCTCGGGG ACAAGGTAGG CTGCAAAAGT GAGGCGAGGG GCTGTTGTCT GGGAGAGTCA
  CTCATTTCCC CAAGAGAAGA GCAGAGACCC TGAGGGTCTG AGGCTCCGGC TTGCCTGGTG
  CCCAGCTTAT ATAGCAGCCT TGCCCACAGC CCGTCCCGGG GGCCAAGGAA ACATCAAGAC
  Y
  CTCGGGGATG CCTACGAGTT TACAGTGGAC ATGAGAGACT TCTCCCCTGA AGACATCATT
  GTCACCACCT TCAACAACCA CATCGAGGTG CGGGCTGAGA AGGTGAGTCT GGCCCCTGGC
  CCGCCCCAGG GTCCCCACCT TTGCTCCTGC ACTCTGCCTG GTCTAGCCTG GTCTCTGGGC
  CCTACTTTCC CCCTATCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786214	NES09121461	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss147736054	ENSMUSSNP295580	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604273					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786214	NES09121461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	692 bp distal
Gm70184	predicted gene, 70184	1473 bp upstream
Gm70191	predicted gene, 70191	1814 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1734 bp downstream
Tssr40054	transcription start site region 40054	856 bp downstream
Tssr40055	transcription start site region 40055	843 bp downstream
Tssr40056	transcription start site region 40056	822 bp downstream
Tssr40057	transcription start site region 40057	761 bp downstream
Tssr40058	transcription start site region 40058	734 bp downstream
Tssr40059	transcription start site region 40059	710 bp downstream
Tssr40060	transcription start site region 40060	650 bp downstream
Tssr40061	transcription start site region 40061	640 bp downstream
Tssr40062	transcription start site region 40062	9 bp downstream
Tssr40063	transcription start site region 40063	1464 bp upstream
Tssr40064	transcription start site region 40064	1524 bp upstream
Tssr40065	transcription start site region 40065	1539 bp upstream
Tssr40066	transcription start site region 40066	1668 bp upstream
Tssr40067	transcription start site region 40067	1716 bp upstream
Tssr40068	transcription start site region 40068	1768 bp upstream
Tssr40069	transcription start site region 40069	1900 bp upstream
Tssr40070	transcription start site region 40070	1985 bp upstream
Tssr44314	transcription start site region 44314	91 bp downstream
Tssr44315	transcription start site region 44315	1502 bp downstream
Tssr44316	transcription start site region 44316	1585 bp downstream
Tssr44317	transcription start site region 44317	1643 bp downstream