rs27604276 SNP Detail

Summary

• ID
  rs27604276
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAAGAC AGATGTGGCT
  ACGATATAGG TGGGCTACCT GGGACCCTAG GGGTGAGATG TGAATCAAAT AGTCTCATAT
  GGCCAGTGTC ATAGCGGGAG CCCTGGAGGG CTGGCGCTGG GACTGAGGGG CGGCTGGCCC
  TTCAGAGCTT CCAGGTCAAA TTGCTAAAGG GGGAACTTGT CTGCGTAGAC ACAGATTGAG
  K
  TGCGTGAGGC TCACCTCACT CCATCCCTCG GGGACAAGGT AGGCTGCAAA AGTGAGGCGA
  GGGGCTGTTG TCTGGGAGAG TCACTCATTT CCCCAAGAGA AGAGCAGAGA CCCTGAGGGT
  CTGAGGCTCC GGCTTGCCTG GTGCCCAGCT TATATAGCAG CCTTGCCCAC AGCCCGTCCC
  GGGGGCCAAG GAAACATCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37786217	NES09121456	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G	G		G	G	G	G	G
ss147736039	ENSMUSSNP3905530	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27604276					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786217	NES09121456	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	488 bp distal
Gm70184	predicted gene, 70184	1269 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Tssr40053	transcription start site region 40053	1530 bp downstream
Tssr40054	transcription start site region 40054	652 bp downstream
Tssr40055	transcription start site region 40055	639 bp downstream
Tssr40056	transcription start site region 40056	618 bp downstream
Tssr40057	transcription start site region 40057	557 bp downstream
Tssr40058	transcription start site region 40058	530 bp downstream
Tssr40059	transcription start site region 40059	506 bp downstream
Tssr40060	transcription start site region 40060	446 bp downstream
Tssr40061	transcription start site region 40061	436 bp downstream
Tssr40062	transcription start site region 40062	180 bp upstream
Tssr40063	transcription start site region 40063	1668 bp upstream
Tssr40064	transcription start site region 40064	1728 bp upstream
Tssr40065	transcription start site region 40065	1743 bp upstream
Tssr40066	transcription start site region 40066	1872 bp upstream
Tssr40067	transcription start site region 40067	1920 bp upstream
Tssr40068	transcription start site region 40068	1972 bp upstream
Tssr44314	transcription start site region 44314	295 bp downstream
Tssr44315	transcription start site region 44315	1706 bp downstream
Tssr44316	transcription start site region 44316	1789 bp downstream
Tssr44317	transcription start site region 44317	1847 bp downstream