rs27604277 SNP Detail

Summary

• ID
  rs27604277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA ATTGCTAAAG GGGGAACTTG
  Y
  CTGCGTAGAC ACAGATTGAG GTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786218	NES09121454	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604277					SNP	C	T	T	T	C	T	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786218	NES09121454	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	467 bp distal
Gm70184	predicted gene, 70184	1248 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1509 bp downstream
Tssr40054	transcription start site region 40054	631 bp downstream
Tssr40055	transcription start site region 40055	618 bp downstream
Tssr40056	transcription start site region 40056	597 bp downstream
Tssr40057	transcription start site region 40057	536 bp downstream
Tssr40058	transcription start site region 40058	509 bp downstream
Tssr40059	transcription start site region 40059	485 bp downstream
Tssr40060	transcription start site region 40060	425 bp downstream
Tssr40061	transcription start site region 40061	415 bp downstream
Tssr40062	transcription start site region 40062	201 bp upstream
Tssr40063	transcription start site region 40063	1689 bp upstream
Tssr40064	transcription start site region 40064	1749 bp upstream
Tssr40065	transcription start site region 40065	1764 bp upstream
Tssr40066	transcription start site region 40066	1893 bp upstream
Tssr40067	transcription start site region 40067	1941 bp upstream
Tssr40068	transcription start site region 40068	1993 bp upstream
Tssr44314	transcription start site region 44314	316 bp downstream
Tssr44315	transcription start site region 44315	1727 bp downstream
Tssr44316	transcription start site region 44316	1810 bp downstream
Tssr44317	transcription start site region 44317	1868 bp downstream