rs27604278 SNP Detail

Summary

• ID
  rs27604278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGCAA GTGCTGGGGC
  TCTGAGGGGA GGGGAGGGCC ACAGGTGGGG GACATCTGCT CCAGGCCATC GCCGAGCATG
  CTGTGGCCAC CCACCTGCCA GACATAGGTG CCGCATGGGT CACAGCCATA TGTGGCTGTC
  AAGGTAGACC TGGCCACCAA GACAGATGTG GCTACGATAT AGGTGGGCTA CCTGGGACCC
  K
  AGGGGTGAGA TGTGAATCAA ATAGTCTCAT ATGGCCAGTG TCATAGCGGG AGCCCTGGAG
  GGCTGGCGCT GGGACTGAGG GGCGGCTGGC CCTTCAGAGC TTCCAGGTCA AATTGCTAAA
  GGGGGAACTT GTCTGCGTAG ACACAGATTG AGGTGCGTGA GGCTCACCTC ACTCCATCCC
  TCGGGGACAA GGTAGGCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786219	NES09121451	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	T	T	T	T	T	T	T	T	T
ss147736008	ENSMUSSNP2816249	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604278					SNP	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786219	NES09121451	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	335 bp distal
Gm70184	predicted gene, 70184	1116 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1938 bp downstream
Tssr40053	transcription start site region 40053	1377 bp downstream
Tssr40054	transcription start site region 40054	499 bp downstream
Tssr40055	transcription start site region 40055	486 bp downstream
Tssr40056	transcription start site region 40056	465 bp downstream
Tssr40057	transcription start site region 40057	404 bp downstream
Tssr40058	transcription start site region 40058	377 bp downstream
Tssr40059	transcription start site region 40059	353 bp downstream
Tssr40060	transcription start site region 40060	293 bp downstream
Tssr40061	transcription start site region 40061	283 bp downstream
Tssr40062	transcription start site region 40062	333 bp upstream
Tssr40063	transcription start site region 40063	1821 bp upstream
Tssr40064	transcription start site region 40064	1881 bp upstream
Tssr40065	transcription start site region 40065	1896 bp upstream
Tssr44314	transcription start site region 44314	448 bp downstream
Tssr44315	transcription start site region 44315	1859 bp downstream
Tssr44316	transcription start site region 44316	1942 bp downstream
Tssr44317	transcription start site region 44317	2000 bp downstream