rs27604279 SNP Detail

Summary

• ID
  rs27604279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGC ATGGGTCACA GCCATATGTG
  R
  CTGTCAAGGT AGACCTGGCC ACCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786220	NES09121447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604279					SNP	G	G	G	G	G	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786220	NES09121447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	269 bp distal
Gm70184	predicted gene, 70184	1050 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1872 bp downstream
Tssr40053	transcription start site region 40053	1311 bp downstream
Tssr40054	transcription start site region 40054	433 bp downstream
Tssr40055	transcription start site region 40055	420 bp downstream
Tssr40056	transcription start site region 40056	399 bp downstream
Tssr40057	transcription start site region 40057	338 bp downstream
Tssr40058	transcription start site region 40058	311 bp downstream
Tssr40059	transcription start site region 40059	287 bp downstream
Tssr40060	transcription start site region 40060	227 bp downstream
Tssr40061	transcription start site region 40061	217 bp downstream
Tssr40062	transcription start site region 40062	399 bp upstream
Tssr40063	transcription start site region 40063	1887 bp upstream
Tssr40064	transcription start site region 40064	1947 bp upstream
Tssr40065	transcription start site region 40065	1962 bp upstream
Tssr44314	transcription start site region 44314	514 bp downstream
Tssr44315	transcription start site region 44315	1925 bp downstream