rs27604280 SNP Detail

Summary

• ID
  rs27604280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCCTG GACCCACTCG
  TTTCTCCAGC CCAGCCCCTG CCCGTCTGGA CAGGGACCCC CGCTGCCTGT GGATGAGCCA
  TCGGACCTCC TCCGCCTTCA GAGCGGAGAG AAGCTTCCGT TCCTCTTCCT CCTCCTCCTC
  CTCCTCTTCT TCTTCGGCCT CCCGTGCCCT TCCAGCCCAG GACCCACCCA TGGAGAAGGC
  Y
  TTGAGCATGT TTTCAGACGA CTTTGGCAGT TTTATGCTGC CCCACTCGGA GCCCCTGGCC
  TTCCCAGGCA AGTGCTGGGG CTCTGAGGGG AGGGGAGGGC CACAGGTGGG GGACATCTGC
  TCCAGGCCAT CGCCGAGCAT GCTGTGGCCA CCCACCTGCC AGACATAGGT GCCGCATGGG
  TCACAGCCAT ATGTGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786221	NES09121446	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	T	T	T	T	T
ss147735988	ENSMUSSNP6027446	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604280					SNP	C	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786221	NES09121446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	73 bp distal
Gm70184	predicted gene, 70184	854 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1676 bp downstream
Tssr40053	transcription start site region 40053	1115 bp downstream
Tssr40054	transcription start site region 40054	237 bp downstream
Tssr40055	transcription start site region 40055	224 bp downstream
Tssr40056	transcription start site region 40056	203 bp downstream
Tssr40057	transcription start site region 40057	142 bp downstream
Tssr40058	transcription start site region 40058	115 bp downstream
Tssr40059	transcription start site region 40059	91 bp downstream
Tssr40060	transcription start site region 40060	31 bp downstream
Tssr40061	transcription start site region 40061	21 bp downstream
Tssr40062	transcription start site region 40062	595 bp upstream
Tssr44314	transcription start site region 44314	710 bp downstream