rs27604281 SNP Detail

Summary

• ID
  rs27604281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141148866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GCAACCCTGC CCTCCTGTGT
  Y
  GGGCTGTCAG CAGAGCCGTT TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786222	NES09121444	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	T	C	C	T	C	T	T
ss45720291	mCV22897361	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss147735973	ENSMUSSNP6929917	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604281					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786222	NES09121444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141148866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	1877 bp distal
Cpgi15227	CpG island 15227	79 bp proximal
Gm70184	predicted gene, 70184	496 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1318 bp downstream
Tssr40053	transcription start site region 40053	757 bp downstream
Tssr40054	transcription start site region 40054	104 bp upstream
Tssr40055	transcription start site region 40055	132 bp upstream
Tssr40056	transcription start site region 40056	139 bp upstream
Tssr40057	transcription start site region 40057	195 bp upstream
Tssr40058	transcription start site region 40058	230 bp upstream
Tssr40059	transcription start site region 40059	253 bp upstream
Tssr40060	transcription start site region 40060	286 bp upstream
Tssr40061	transcription start site region 40061	329 bp upstream
Tssr40062	transcription start site region 40062	953 bp upstream
Tssr44314	transcription start site region 44314	1068 bp downstream