rs27604282 SNP Detail

Summary

• ID
  rs27604282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141148844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAGTC TAATAAGGGA
  GGCACAGGCC CTGGGGGGCA CAGTACAAGA GGAGAGGAGG GTCCCAGGCT ATCGAGGGGA
  CCAACAAACC ACGAAGTCCT GGGGACAGGC ACAGGGCAGG ACCCACCCCC TGCCCTGGCA
  GGTACAGAGG TCCTTGGGGC TGGAGCTCTG GACTAACAGT GCCAGGTGGT GAGCTCAGCC
  Y
  TGCAACCCTG CCCTCCTGTG TCGGGCTGTC AGCAGAGCCG TTTCTCCCAA GAAGATTTCC
  AGGCCCCTCT GGGCAATGAA GAGGCCTAAA TTTAGCCAGC AGACAAGGGG CTGGCCTCGA
  GCCCAGGGAC AGTTGGGCCT TATAAAGCGC TGGCAGTCAG GGGCCCCGGC ACGCTTCCGT
  GGAGGCCTGG ACCCACTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786223	NES09121443	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604282					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786223	NES09121443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141148844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	1855 bp distal
Cpgi15227	CpG island 15227	101 bp proximal
Gm70184	predicted gene, 70184	474 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40052	transcription start site region 40052	1296 bp downstream
Tssr40053	transcription start site region 40053	735 bp downstream
Tssr40054	transcription start site region 40054	126 bp upstream
Tssr40055	transcription start site region 40055	154 bp upstream
Tssr40056	transcription start site region 40056	161 bp upstream
Tssr40057	transcription start site region 40057	217 bp upstream
Tssr40058	transcription start site region 40058	252 bp upstream
Tssr40059	transcription start site region 40059	275 bp upstream
Tssr40060	transcription start site region 40060	308 bp upstream
Tssr40061	transcription start site region 40061	351 bp upstream
Tssr40062	transcription start site region 40062	975 bp upstream
Tssr44314	transcription start site region 44314	1090 bp downstream