rs27604286 SNP Detail

Summary

• ID
  rs27604286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141148181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TCAAAGCTCC TCTTTTTGAG
  Y
  TGTGTTAAGA TCAAAGAGGG CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786227	NES09121439	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	C	C	C	T	C	T	C	C
ss147735948	ENSMUSSNP1213725	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604286					SNP	C	C	T	T	T	C	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786227	NES09121439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141148181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	1192 bp distal
Cpgi15227	CpG island 15227	764 bp proximal
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Tssr40052	transcription start site region 40052	633 bp downstream
Tssr40053	transcription start site region 40053	72 bp downstream
Tssr40054	transcription start site region 40054	789 bp upstream
Tssr40055	transcription start site region 40055	817 bp upstream
Tssr40056	transcription start site region 40056	824 bp upstream
Tssr40057	transcription start site region 40057	880 bp upstream
Tssr40058	transcription start site region 40058	915 bp upstream
Tssr40059	transcription start site region 40059	938 bp upstream
Tssr40060	transcription start site region 40060	971 bp upstream
Tssr40061	transcription start site region 40061	1014 bp upstream
Tssr40062	transcription start site region 40062	1638 bp upstream
Tssr44314	transcription start site region 44314	1753 bp downstream