rs27604290 SNP Detail

Summary

• ID
  rs27604290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG AACCTCCTCA GGATTAGGGA
  Y
  TAGGGGAAAC CACAGAGAGG TCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786231	NES09121435	PERLEGEN	MM_PANEL2	f	SNP	T			C	T	C	C	T	T	T	C	T	C	T	T
ss147735898	ENSMUSSNP5407549	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604290					SNP	T	T	C	C	T	C	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786231	NES09121435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	791 bp distal
Cpgi15227	CpG island 15227	1165 bp proximal
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	310 bp upstream
Rr100445	regulatory region 100445	20 bp proximal
Tssr40052	transcription start site region 40052	232 bp downstream
Tssr40053	transcription start site region 40053	288 bp upstream
Tssr40054	transcription start site region 40054	1190 bp upstream
Tssr40055	transcription start site region 40055	1218 bp upstream
Tssr40056	transcription start site region 40056	1225 bp upstream
Tssr40057	transcription start site region 40057	1281 bp upstream
Tssr40058	transcription start site region 40058	1316 bp upstream
Tssr40059	transcription start site region 40059	1339 bp upstream
Tssr40060	transcription start site region 40060	1372 bp upstream
Tssr40061	transcription start site region 40061	1415 bp upstream