rs27604295 SNP Detail

Summary

• ID
  rs27604295
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACAGTGAC AGCGTGTCTG CTTTTAGCTG GTGGCTCTTG
  TGTCCCTGGC GGGCTTCTCC AGGGGGCCCC CCACCTCTGT CTGTCTCACC TCAGTACCGG
  W
  GAGCCTCTGA AGCCTTGCCA GACACACTTC AGCTGGGACT GGCAACACAA ACTAAAGTTG
  CAGTAGGAAT CTGGGGGTTG ACAGAGCCCT CTATCTCCAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37786236	NES09121430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27604295					SNP	T	T	T	T	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786236	NES09121430	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	535 bp distal
Cpgi15227	CpG island 15227	1421 bp proximal
Gm70182	predicted gene, 70182	1973 bp downstream
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	566 bp upstream
Rr100445	regulatory region 100445	276 bp proximal
Tssr40052	transcription start site region 40052	14 bp upstream
Tssr40053	transcription start site region 40053	544 bp upstream
Tssr40054	transcription start site region 40054	1446 bp upstream
Tssr40055	transcription start site region 40055	1474 bp upstream
Tssr40056	transcription start site region 40056	1481 bp upstream
Tssr40057	transcription start site region 40057	1537 bp upstream
Tssr40058	transcription start site region 40058	1572 bp upstream
Tssr40059	transcription start site region 40059	1595 bp upstream
Tssr40060	transcription start site region 40060	1628 bp upstream
Tssr40061	transcription start site region 40061	1671 bp upstream