rs27604296 SNP Detail

Summary

• ID
  rs27604296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCTCTGG GATCTGGCAG
  AGAAGCATGT CTGGTGTCAG GAGAATGACC TTGGTGACCT TTCGAGGTCC TGCCTGGCCA
  CTGAAGCCAG CACTCAATAT TTATGTGGAT GACTGCTCAG GAGTGTGGGG AAAGGAGGGG
  GGATGGTGGG CGGGCGTGGG GGAGTAAAGC GAGCTGACAC CCAGCGGCAG TGACTCAGGC
  Y
  CTCAGCACCG TGACAGTGAC AGCGTGTCTG CTTTTAGCTG GTGGCTCTTG TGTCCCTGGC
  GGGCTTCTCC AGGGGGCCCC CCACCTCTGT CTGTCTCACC TCAGTACCGG TGAGCCTCTG
  AAGCCTTGCC AGACACACTT CAGCTGGGAC TGGCAACACA AACTAAAGTT GCAGTAGGAA
  TCTGGGGGTT GACAGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786237	NES09121429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604296					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786237	NES09121429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	424 bp distal
Cpgi15227	CpG island 15227	1532 bp proximal
Gm70182	predicted gene, 70182	1862 bp downstream
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	677 bp upstream
Rr100445	regulatory region 100445	387 bp proximal
Tssr40052	transcription start site region 40052	125 bp upstream
Tssr40053	transcription start site region 40053	655 bp upstream
Tssr40054	transcription start site region 40054	1557 bp upstream
Tssr40055	transcription start site region 40055	1585 bp upstream
Tssr40056	transcription start site region 40056	1592 bp upstream
Tssr40057	transcription start site region 40057	1648 bp upstream
Tssr40058	transcription start site region 40058	1683 bp upstream
Tssr40059	transcription start site region 40059	1706 bp upstream
Tssr40060	transcription start site region 40060	1739 bp upstream
Tssr40061	transcription start site region 40061	1782 bp upstream