rs27604298 SNP Detail

Summary

• ID
  rs27604298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141147253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCTAT TGTTTTGGGT
  GTTTTTCAAA CAGGGTTTCA GGAATAATGA CCTCCAGCTT CCTATGAAGC CGAGGCTGAC
  CTTGAACTCC CGATCCTCCA GGGGCAACAG GCATGTCCCA CCACACCCAA CTATGGACCA
  GATCGGCTCT GAAACTCCTC TCGTCTCTGG GATCTGGCAG AGAAGCATGT CTGGTGTCAG
  R
  AGAATGACCT TGGTGACCTT TCGAGGTCCT GCCTGGCCAC TGAAGCCAGC ACTCAATATT
  TATGTGGATG ACTGCTCAGG AGTGTGGGGA AAGGAGGGGG GATGGTGGGC GGGCGTGGGG
  GAGTAAAGCG AGCTGACACC CAGCGGCAGT GACTCAGGCC CTCAGCACCG TGACAGTGAC
  AGCGTGTCTG CTTTTAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786239	NES09121427	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27604298					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786239	NES09121427	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141147253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15226	CpG island 15226	264 bp distal
Cpgi15227	CpG island 15227	1692 bp proximal
Gm70182	predicted gene, 70182	1702 bp downstream
Gm70184	predicted gene, 70184	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	837 bp upstream
Rr100445	regulatory region 100445	547 bp proximal
Rr103390	regulatory region 103390	1853 bp distal
Tssr40052	transcription start site region 40052	285 bp upstream
Tssr40053	transcription start site region 40053	815 bp upstream
Tssr40054	transcription start site region 40054	1717 bp upstream
Tssr40055	transcription start site region 40055	1745 bp upstream
Tssr40056	transcription start site region 40056	1752 bp upstream
Tssr40057	transcription start site region 40057	1808 bp upstream
Tssr40058	transcription start site region 40058	1843 bp upstream
Tssr40059	transcription start site region 40059	1866 bp upstream
Tssr40060	transcription start site region 40060	1899 bp upstream
Tssr40061	transcription start site region 40061	1942 bp upstream