rs27606572 SNP Detail

Summary

• ID
  rs27606572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172852538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACATAG GCAAGAAATA
  AACACTAACC CAGCAGGACC ACACCAGACC AGTCCTCACA GGAAGGAGCA GCCAGCAGTA
  AAAACCTACA GGAAACAGGC CTGTAGGTGG TAACATGTCA CCTTTTAAAG GGATAAAGAA
  CTTTTAGCAA AACTAATGAC CCAGTTAAAA TCCCCAAAGG TAACAACCTG GCCAGCTACC
  R
  GTATGTGAAG GCAGTGTTTC TTTTTATCCC AGGAAAGCTC GGAGACAGCA TCTCACACAT
  TGTTTTCAGA AACTCAGAAC ATAGGGTGGG CGGGCTCTAA AGAATGGCTC CATGGTTGAG
  AGCACGTGAT GCATGGTAAC AAAGACCTAA GTTCAGATCC CTGACGTGGT GACAAGGTGG
  GCCTGGTTCA GTGCACTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825495	NES08710528	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27606572					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825495	NES08710528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172852538 () rs orientation: forward

Symbol	Name	Function Class
Rae1	ribonucleic acid export 1	within coordinates
Rr374300	regulatory region 374300	within coordinates
Rr571808	regulatory region 571808	654 bp proximal