rs27606583 SNP Detail

Summary

• ID
  rs27606583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172849655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTC ATCACCACTG ATTAGTGAGG
  K
  TGAGCCTAGA TCAGAGCAGC ACATG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37825506	NES08710601	PERLEGEN	MM_PANEL2	f	SNP	G					G		T
ss148328097	ENSMUSSNP3586046	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	G
ss320621294	CHEV_2_172833363	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27606583					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825506	NES08710601	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172849655 () rs orientation: forward

Symbol	Name	Function Class
Rae1	ribonucleic acid export 1	within coordinates
Rr374300	regulatory region 374300	1915 bp upstream
Tssr21992	transcription start site region 21992	1763 bp downstream