rs27608470 SNP Detail

Summary

• ID
  rs27608470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGCAT TTATAATGCA
  CAATAATATG AACGTGCAAG TGCACTACAC CACTCACTGT TTTATATAAA ATGACTCCCA
  GTCACCTTGG ATCTGTTATT GAATTACATA CTGAAATTAT ATTCATTCAA CTATTCCCCT
  GTTGTAAGTC AGGAAGGATC AGAGAAATAT TTTCTGAACA CAACGGGACC CTATACTCAC
  R
  AACTCACGGT AGCTGGGGTC ACCTGCACAA AGCATTTCTG CATGGGAATG GGGAGACTTG
  TGAACCCCCA TCCCTGGCTG AGTCAGTTTT CTCTGCAGGT GTGGCTACTG GTAGGTCACC
  CATGCTCCAG TGCACAGCCC CACACCCAGG AAGATGTGAA CAGAAAATTG TAAACAGTGG
  ATTGCTAAAA ACAAAACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780894	NES09153727	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	A	G	G	A	A	G	A
ss147541699	ENSMUSSNP4931770	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608470					SNP	G	G	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780894	NES09153727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947957 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86244	regulatory region 86244	357 bp distal
Rr102925	regulatory region 102925	within coordinates
Tssr43965	transcription start site region 43965	1992 bp upstream