rs27608471 SNP Detail

Summary

• ID
  rs27608471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCGGCC CCCAGAGTGC
  TGGGATCAGT GGCAGGAAGC ATTTATAATG CACAATAATA TGAACGTGCA AGTGCACTAC
  ACCACTCACT GTTTTATATA AAATGACTCC CAGTCACCTT GGATCTGTTA TTGAATTACA
  TACTGAAATT ATATTCATTC AACTATTCCC CTGTTGTAAG TCAGGAAGGA TCAGAGAAAT
  R
  TTTTCTGAAC ACAACGGGAC CCTATACTCA CAAACTCACG GTAGCTGGGG TCACCTGCAC
  AAAGCATTTC TGCATGGGAA TGGGGAGACT TGTGAACCCC CATCCCTGGC TGAGTCAGTT
  TTCTCTGCAG GTGTGGCTAC TGGTAGGTCA CCCATGCTCC AGTGCACAGC CCCACACCCA
  GGAAGATGTG AACAGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780895	NES09153725	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	G	G	A	A	G	A
ss147541694	ENSMUSSNP185146	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608471					SNP	G	G	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780895	NES09153725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947925 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43965	transcription start site region 43965	1960 bp upstream