rs27608476 SNP Detail

Summary

• ID
  rs27608476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTATCTC TAAGAAGCTA
  TTCAAAACAC AAACAAAAAA GCAGTATAGT ATACACAGCT GAAAATTAAT TATATTAAAA
  TTAAAAATAA TACTTTTGGC CTAAGAAAAT ATGGAAATGA ACACCTGCAG TTCGTGGAAA
  TACAAACTGG TACAGACTTT GAAATTTTGG CAAAATGCAT AAAGTAGCTA GAGATGGTGG
  Y
  ACGGGCTATA ATCTGCATCC AGGAGAGCTG CAGCCAACAG TAAGACACCG TCTCAAAAGG
  ACGAGGAAAG GTGCAAACCT TCCCACACCT ACCTGTAACC TAGCTCAAGG GCAATACCCG
  ATAGCATAGT CAAAGAGGCC ATCTACAAGG TCCAACAACT GGGAAATGGC AAATAGAATT
  CCTATTAAAT AAGAAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780900	NES09153716	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	C	C	T	T	C		C	T	T	C		T
ss147541658	ENSMUSSNP1763978	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321351242	CHEV_4_134776006	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608476					SNP	C	C	C	C	T	T	C	C	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780900	NES09153716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947402 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86244	regulatory region 86244	within coordinates
Rr102925	regulatory region 102925	within coordinates
Tssr43965	transcription start site region 43965	1437 bp upstream