rs27608478 SNP Detail

Summary

• ID
  rs27608478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCTAGGG ATTAAATCTA
  TGTCCTCTGA AAGAACAACC AGTGCTCTTA ACCGCTGAGC CATCTCTCCA GCCCCTATGC
  TAATCATTAT TAATAATAAT TTATCATCAT AAGGTATGAC CAATGAAAAA AAGACACAGG
  TACTAACTAG GAGGTTCCAA AATGAAAGGA ACGAAGTTGT GAAGTTCAGC ACACCGAGAC
  Y
  AACCACTGGG GGGCAGCAGC AGAGCAGCAG AAAGTCATCT GTCTAGAAGC TAGGAGGGCT
  GCTTAGCACT CCATCTCTAT CTCTAAGAAG CTATTCAAAA CACAAACAAA AAAGCAGTAT
  AGTATACACA GCTGAAAATT AATTATATTA AAATTAAAAA TAATACTTTT GGCCTAAGAA
  AATATGGAAA TGAACACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780902	NES09153712	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	T	C	C	C	T		C	C	T		C
ss147541627	ENSMUSSNP4029093	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321351234	CHEV_4_134775732	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608478					SNP	T	T	T	T	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780902	NES09153712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947128 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1928 bp distal
Rr86244	regulatory region 86244	within coordinates
Rr102925	regulatory region 102925	274 bp proximal
Tssr43965	transcription start site region 43965	1163 bp upstream