rs27608481 SNP Detail

Summary

• ID
  rs27608481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAACACGAG CGCCCAAGAA
  CAGCCCTGCC TTACCCAAGG CACGAGTTCA GACTACAAAG TCAGTTACAG GATGGACTGG
  CAGCAGCCTC CATAAGAGCC AAGTGGACTG AAATGCTACG ACTGTCATGA CTCAAACTTG
  GACTAAGCCA GTTGTGTGCA GCTGGAAAGA CAAGGCCAGG AAGCCTTAGG AGGGAGCAGG
  R
  ACAGCATAGA AAAAACACGG ACAATAGGAG CTCTCTCCAC TCCCTCTGTA GACCAGGCAG
  GCCTCGAACT CAGAGATCCA TCTGCCTTTG CCTTCCAAGT ACTGGGATCT TAAGAGAACC
  CTAAGACTGA ATAAAAACCA GTGAAAACTG AGAGGAAAAT CAGTTATAGT TTGTGTTAAC
  CATTATTTTT AAATGGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780905	NES09153706	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss45727438	mCV25114915	ABI	CRAMUS_MOUSE	f	SNP	A	A						G		G
ss147541568	ENSMUSSNP3864111	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608481					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780905	NES09153706	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946610 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1410 bp distal
Rr86244	regulatory region 86244	191 bp proximal
Rr102925	regulatory region 102925	792 bp proximal
Tssr43965	transcription start site region 43965	645 bp upstream