rs27608482 SNP Detail

Summary

• ID
  rs27608482
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACCTAAA CAGAGAGCCT
  GGGAGCCAGG GCTCTCAGCC TGCCTGCTAA CACGAGCGCC CAAGAACAGC CCTGCCTTAC
  CCAAGGCACG AGTTCAGACT ACAAAGTCAG TTACAGGATG GACTGGCAGC AGCCTCCATA
  AGAGCCAAGT GGACTGAAAT GCTACGACTG TCATGACTCA AACTTGGACT AAGCCAGTTG
  W
  GTGCAGCTGG AAAGACAAGG CCAGGAAGCC TTAGGAGGGA GCAGGGACAG CATAGAAAAA
  ACACGGACAA TAGGAGCTCT CTCCACTCCC TCTGTAGACC AGGCAGGCCT CGAACTCAGA
  GATCCATCTG CCTTTGCCTT CCAAGTACTG GGATCTTAAG AGAACCCTAA GACTGAATAA
  AAACCAGTGA AAACTGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780906	NES09153705	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T		T	T	T	A	A	T	T	A	T
ss45669502	mCV25114916	ABI	CRAMUS_MOUSE	f	SNP	A	A						T		T
ss147541563	ENSMUSSNP2187354	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608482					SNP	A	A	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780906	NES09153705	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946564 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43964	transcription start site region 43964	1991 bp upstream
Tssr43965	transcription start site region 43965	599 bp upstream