rs27608484 SNP Detail

Summary

• ID
  rs27608484
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134946235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGAGGACAG AACTGAAGGA GAGAGGTCTA TCCTGCCAAC
  CAACAAAACC GTCTGCATGG TTTGTGGCCC TCACCAGCAA GCCGTGGCCC AATCCCACTA
  W
  CAGGTAAACT GCAACGATAT ATGGGGAAAG GCAAGTCTAC TAATTCAGAG CTAGGAGAAA
  GTCTTCCAAG ACAGAAAGCA TAATCCTGCT CACGAAGAAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780910	NES09153701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608484					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780910	NES09153701	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134946235 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	1035 bp distal
Rr86244	regulatory region 86244	566 bp proximal
Rr102925	regulatory region 102925	1167 bp proximal
Tssr43960	transcription start site region 43960	1938 bp upstream
Tssr43961	transcription start site region 43961	1879 bp upstream
Tssr43962	transcription start site region 43962	1833 bp upstream
Tssr43963	transcription start site region 43963	1774 bp upstream
Tssr43964	transcription start site region 43964	1662 bp upstream
Tssr43965	transcription start site region 43965	270 bp upstream