rs27608486 SNP Detail

Summary

• ID
  rs27608486
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA TGTAGCTCAG TCTGGCTTGA
  K
  ATTCCTTGAG AGGGAAATCT TGGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37780914	NES09153697	PERLEGEN	MM_PANEL2	f	SNP	T			T	G	G	G	T	T		T	G	T		T
ss147541527	ENSMUSSNP4490098	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				G
ss321351224	CHEV_4_134774214	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27608486					SNP	T	T	T	T	G	G	G	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780914	NES09153697	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945610 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	410 bp distal
Rr86244	regulatory region 86244	1191 bp proximal
Rr102925	regulatory region 102925	1792 bp proximal
Tssr43955	transcription start site region 43955	1903 bp upstream
Tssr43956	transcription start site region 43956	1872 bp upstream
Tssr43957	transcription start site region 43957	1622 bp upstream
Tssr43958	transcription start site region 43958	1486 bp upstream
Tssr43959	transcription start site region 43959	1465 bp upstream
Tssr43960	transcription start site region 43960	1313 bp upstream
Tssr43961	transcription start site region 43961	1254 bp upstream
Tssr43962	transcription start site region 43962	1208 bp upstream
Tssr43963	transcription start site region 43963	1149 bp upstream
Tssr43964	transcription start site region 43964	1037 bp upstream
Tssr43965	transcription start site region 43965	313 bp downstream