rs27608487 SNP Detail

Summary

• ID
  rs27608487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTTCAC AATTATCTAT
  TGTCTACTAT TATAATTATT ATTATTATAT TATATATAAT ATAGTATATA ATATGATATA
  ATATAAAATG TAATATATAA TATAATATAT TATTATTATA TTTATCTATT ATATCCCTAT
  TAATTCAGCC ACAGGAGAAG AAAAAAATTT CTTGCTCAGG TCTCATATTT TTTTCTCCCT
  R
  GGTCAGGGTT TCATGTAGCT CAGTCTGGCT TGAGATTCCT TGAGAGGGAA ATCTTGGTCT
  TCCTGCCTCT ACCCGACTCC TGAGCGCTAC GATTAAGGTA CCCAATACAG CTGACTTATA
  AACATGATTT TCTACTTAGT TAGCTCTAGG ATCCACTTAC TGAGCTGACT CTGGCTGGGG
  TAGAGAACGG CTCTGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780915	NES09153696	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608487					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780915	NES09153696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945576 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	376 bp distal
Rr86244	regulatory region 86244	1225 bp proximal
Rr102925	regulatory region 102925	1826 bp proximal
Tssr43955	transcription start site region 43955	1869 bp upstream
Tssr43956	transcription start site region 43956	1838 bp upstream
Tssr43957	transcription start site region 43957	1588 bp upstream
Tssr43958	transcription start site region 43958	1452 bp upstream
Tssr43959	transcription start site region 43959	1431 bp upstream
Tssr43960	transcription start site region 43960	1279 bp upstream
Tssr43961	transcription start site region 43961	1220 bp upstream
Tssr43962	transcription start site region 43962	1174 bp upstream
Tssr43963	transcription start site region 43963	1115 bp upstream
Tssr43964	transcription start site region 43964	1003 bp upstream
Tssr43965	transcription start site region 43965	347 bp downstream