rs27608488 SNP Detail

Summary

• ID
  rs27608488
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAATGTAATA TATAATATAA TATATTATTA TTATATTTAT
  CTATTATATC CCTATTAATT CAGCCACAGG AGAAGAAAAA AATTTCTTGC TCAGGTCTCA
  K
  ATTTTTTTCT CCCTGGGTCA GGGTTTCATG TAGCTCAGTC TGGCTTGAGA TTCCTTGAGA
  GGGAAATCTT GGTCTTCCTG CCTCTACCCG ACTCCTGAGC G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780916	NES09153695	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	T	T	T	T	T	T	T	T	T
ss147541522	ENSMUSSNP293710	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608488					SNP	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780916	NES09153695	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945561 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43955	transcription start site region 43955	1854 bp upstream
Tssr43956	transcription start site region 43956	1823 bp upstream
Tssr43957	transcription start site region 43957	1573 bp upstream
Tssr43958	transcription start site region 43958	1437 bp upstream
Tssr43959	transcription start site region 43959	1416 bp upstream
Tssr43960	transcription start site region 43960	1264 bp upstream
Tssr43961	transcription start site region 43961	1205 bp upstream
Tssr43962	transcription start site region 43962	1159 bp upstream
Tssr43963	transcription start site region 43963	1100 bp upstream
Tssr43964	transcription start site region 43964	988 bp upstream
Tssr43965	transcription start site region 43965	362 bp downstream