rs27608489 SNP Detail

Summary

• ID
  rs27608489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATTGAA CTCAAGACCT
  CTGGAAGAGC AGTCAGTGCT CTTAACCACT GAGCCATCTC TCCACCCCAA CACACCAGCT
  TCTAAAACCA TCTTTTCTTG TCTCAGATCT TTACATGCAA CAAATGCCCA TTAGTATTGC
  ATTAAGCTTG GTTTGTCACA GAATTAACAT TGTGGCCTTG AAAGGTCACC ACACAGAATT
  R
  GACAGTGTCA GCCCAGTTCA CAATTATCTA TTGTCTACTA TTATAATTAT TATTATTATA
  TTATATATAA TATAGTATAT AATATGATAT AATATAAAAT GTAATATATA ATATAATATA
  TTATTATTAT ATTTATCTAT TATATCCCTA TTAATTCAGC CACAGGAGAA GAAAAAAATT
  TCTTGCTCAG GTCTCATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780917	NES09153803	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	G	A	A	A	A		A	A	A	A		A
ss321351220	CHEV_4_134773968	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608489					SNP	A	G	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780917	NES09153803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945364 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	164 bp distal
Rr86244	regulatory region 86244	1437 bp proximal
Tssr43955	transcription start site region 43955	1657 bp upstream
Tssr43956	transcription start site region 43956	1626 bp upstream
Tssr43957	transcription start site region 43957	1376 bp upstream
Tssr43958	transcription start site region 43958	1240 bp upstream
Tssr43959	transcription start site region 43959	1219 bp upstream
Tssr43960	transcription start site region 43960	1067 bp upstream
Tssr43961	transcription start site region 43961	1008 bp upstream
Tssr43962	transcription start site region 43962	962 bp upstream
Tssr43963	transcription start site region 43963	903 bp upstream
Tssr43964	transcription start site region 43964	791 bp upstream
Tssr43965	transcription start site region 43965	559 bp downstream