rs27608495 SNP Detail

Summary

• ID
  rs27608495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134944801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACCTAT CTTCCAGGTC
  CCCACATGAG GCATGTCTGA CTGGAGAGAC TATTAATTCT GGAAACCTTT ATTAACATAT
  TCTATGGGCC AGCTCTTCCA GGACTGGCGT TTGGTTCCCA GCACCCATGT TGGGCAGCTC
  ACAACTGCCT GTAACCCCGA GGGCGTAAAG GCACCCATTT CTGGGCTCCC AGGTTACCAA
  R
  GTGAACACAC TCACACAGAG AGCGAGCTAC ATTGAGTGTA GACTAGGACG GCACACTACT
  CCAGGTACTG GGAAACAACA GCGGCTCTGG AAGCCAGCTT TGGGCACAGG GAGATGGCTG
  AGTCTAATCA CTGGGTAAGT ATTTGTCTAA AAACAGACTA TTTTAAGTTT GTTTTCTTCC
  TTTTTTAGTT TGGGCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780923	NES09153931	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A	G	G	G	G		G	G	G	G		G
ss147541455	ENSMUSSNP1940215	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss321351208	CHEV_4_134773405	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608495					SNP	G	G	A	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780923	NES09153931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134944801 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	200 bp proximal
Rr86244	regulatory region 86244	2000 bp proximal
Tssr43955	transcription start site region 43955	1094 bp upstream
Tssr43956	transcription start site region 43956	1063 bp upstream
Tssr43957	transcription start site region 43957	813 bp upstream
Tssr43958	transcription start site region 43958	677 bp upstream
Tssr43959	transcription start site region 43959	656 bp upstream
Tssr43960	transcription start site region 43960	504 bp upstream
Tssr43961	transcription start site region 43961	445 bp upstream
Tssr43962	transcription start site region 43962	399 bp upstream
Tssr43963	transcription start site region 43963	340 bp upstream
Tssr43964	transcription start site region 43964	228 bp upstream
Tssr43965	transcription start site region 43965	1122 bp downstream