rs27608496 SNP Detail

Summary

• ID
  rs27608496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134944708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGG GCCAGCTCTT CCAGGACTGG
  Y
  GTTTGGTTCC CAGCACCCAT GTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37780924	NES09153929	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	C	C	C		C	C	C	C		C
ss147541450	ENSMUSSNP3433921	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss321351207	CHEV_4_134773312	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27608496					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780924	NES09153929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134944708 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Tssr43955	transcription start site region 43955	1001 bp upstream
Tssr43956	transcription start site region 43956	970 bp upstream
Tssr43957	transcription start site region 43957	720 bp upstream
Tssr43958	transcription start site region 43958	584 bp upstream
Tssr43959	transcription start site region 43959	563 bp upstream
Tssr43960	transcription start site region 43960	411 bp upstream
Tssr43961	transcription start site region 43961	352 bp upstream
Tssr43962	transcription start site region 43962	306 bp upstream
Tssr43963	transcription start site region 43963	247 bp upstream
Tssr43964	transcription start site region 43964	135 bp upstream
Tssr43965	transcription start site region 43965	1215 bp downstream