rs27608497 SNP Detail

Summary

• ID
  rs27608497
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134944166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACACAATA TTACAACTCC
  CCCAGTACAT AAATGTTCCT ATACCATGCA CACAGCAACA TGGGGTCCAC TGATGTCGCA
  GGCGACTTTT CTAATGGTGG AACATAGCAC CTCAAGTTCT GCCATCTACA CAGTGAAGGG
  ACGTGATGGT CGGGGCTCCA GAGTGACAGC AAACTGCCTC TTGGGTGACA CGCTTGTGGC
  S
  AAGTGCCTCC AAACTGGAGG GCAGCAGATG GGCAGGGCAG GGTAGGGTAG GTGGGCTGGG
  TAGAGGAGTT TAGAATAATA CTGCTCAGGA GTGTGTACTG GAGAGGCCTA CTCTGTCTAG
  CCTTACTCCT AGTCTTGAGT AACTGTGTGT TCATGCAAAA TACACTTCTA CTTTAGGAGG
  CGGAGCAGTC TGTTAGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37780925	NES09153927	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27608497					SNP	G	G	G	G	G	G	G	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37780925	NES09153927	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134944166 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	835 bp proximal
Tssr43955	transcription start site region 43955	459 bp upstream
Tssr43956	transcription start site region 43956	428 bp upstream
Tssr43957	transcription start site region 43957	178 bp upstream
Tssr43958	transcription start site region 43958	42 bp upstream
Tssr43959	transcription start site region 43959	21 bp upstream
Tssr43960	transcription start site region 43960	120 bp downstream
Tssr43961	transcription start site region 43961	174 bp downstream
Tssr43962	transcription start site region 43962	205 bp downstream
Tssr43963	transcription start site region 43963	280 bp downstream
Tssr43964	transcription start site region 43964	399 bp downstream
Tssr43965	transcription start site region 43965	1757 bp downstream