rs27609278 SNP Detail

Summary

• ID
  rs27609278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTATCA TGCTCTATAA
  ACGGGCCAGT CCTCACAGTG ATATTCATTC CTGTTTGGCG AAGGGGACAT GGACGACTGC
  TCTAATTATA CTTGCTTAAC GCTTTCCCGG GTCCAAAGCA CTTCAGATAT ATCTGTGACC
  ATCACCACAG ACCTTATACT TTACAAATGA GGAGATAGGC GTTACAGAGG GCCCAGCATG
  W
  GCAAAGTGTG TATATCCAAG GAGCCTGGGC TACCTCCCTG CCTCTCTCTC CCAAATTCCT
  TGTTTGCTGT TGGACATCAT TGCTCTCTAT GGAGAAGAAA ATGGCCACCA CTGCAAACTG
  TTTTTTGTCA GGAGAGTGTC TTCTCTATTT CCAGTTCCTA TTGGCTTAGC TCCAGTCAAT
  TACTCGTCCC TGATCCAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37784807	NES09116577	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	T	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609278					SNP	A	A	A	T	A	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784807	NES09116577	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547897 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1509 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	587 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1542 bp downstream
Tssr40109	transcription start site region 40109	1507 bp downstream
Tssr40110	transcription start site region 40110	1484 bp downstream
Tssr40111	transcription start site region 40111	739 bp upstream
Tssr40112	transcription start site region 40112	767 bp upstream
Tssr40113	transcription start site region 40113	796 bp upstream
Tssr40114	transcription start site region 40114	1118 bp upstream
Tssr40115	transcription start site region 40115	1152 bp upstream
Tssr40116	transcription start site region 40116	1192 bp upstream
Tssr44374	transcription start site region 44374	1454 bp upstream
Tssr44375	transcription start site region 44375	1221 bp upstream
Tssr44376	transcription start site region 44376	1203 bp upstream
Tssr44377	transcription start site region 44377	594 bp upstream
Tssr44378	transcription start site region 44378	473 bp upstream
Tssr44379	transcription start site region 44379	766 bp downstream
Tssr44380	transcription start site region 44380	778 bp downstream
Tssr44381	transcription start site region 44381	1134 bp downstream
Tssr44382	transcription start site region 44382	1153 bp downstream
Tssr44383	transcription start site region 44383	1204 bp downstream
Tssr44384	transcription start site region 44384	1671 bp downstream
Tssr44385	transcription start site region 44385	1677 bp downstream
Tssr44386	transcription start site region 44386	1687 bp downstream