rs27609280 SNP Detail

Summary

• ID
  rs27609280
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTCTGAG GACATGTGTC
  CCCATGCTTG CAAGGTAAGC TGTTTACCAA CTGAGTTCCT CAACATCCCC ACCTCATTAT
  CATTCCTTAA TCACAGTGTA TCATGCTCTA TAAACGGGCC AGTCCTCACA GTGATATTCA
  TTCCTGTTTG GCGAAGGGGA CATGGACGAC TGCTCTAATT ATACTTGCTT AACGCTTTCC
  M
  GGGTCCAAAG CACTTCAGAT ATATCTGTGA CCATCACCAC AGACCTTATA CTTTACAAAT
  GAGGAGATAG GCGTTACAGA GGGCCCAGCA TGAGCAAAGT GTGTATATCC AAGGAGCCTG
  GGCTACCTCC CTGCCTCTCT CTCCCAAATT CCTTGTTTGC TGTTGGACAT CATTGCTCTC
  TATGGAGAAG AAAATGGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37784809	NES09116575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27609280					SNP	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784809	NES09116575	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547804 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1416 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	494 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1449 bp downstream
Tssr40109	transcription start site region 40109	1414 bp downstream
Tssr40110	transcription start site region 40110	1391 bp downstream
Tssr40111	transcription start site region 40111	832 bp upstream
Tssr40112	transcription start site region 40112	860 bp upstream
Tssr40113	transcription start site region 40113	889 bp upstream
Tssr40114	transcription start site region 40114	1211 bp upstream
Tssr40115	transcription start site region 40115	1245 bp upstream
Tssr40116	transcription start site region 40116	1285 bp upstream
Tssr44374	transcription start site region 44374	1361 bp upstream
Tssr44375	transcription start site region 44375	1128 bp upstream
Tssr44376	transcription start site region 44376	1110 bp upstream
Tssr44377	transcription start site region 44377	501 bp upstream
Tssr44378	transcription start site region 44378	380 bp upstream
Tssr44379	transcription start site region 44379	859 bp downstream
Tssr44380	transcription start site region 44380	871 bp downstream
Tssr44381	transcription start site region 44381	1227 bp downstream
Tssr44382	transcription start site region 44382	1246 bp downstream
Tssr44383	transcription start site region 44383	1297 bp downstream
Tssr44384	transcription start site region 44384	1764 bp downstream
Tssr44385	transcription start site region 44385	1770 bp downstream
Tssr44386	transcription start site region 44386	1780 bp downstream