rs27609282 SNP Detail

Summary

• ID
  rs27609282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGGGGCTA GTTCCACAGG TTTCTCTTAC TTTCCTATGA
  GAAAGAGCTG TCGAGAGCTG GAAAAATACT CCGGGGTCAG GGTAGTTTTC CTCATGACCC
  M
  AGTGACATTG TCTACATCAC TGCCATGGTT GGCCAGGATA AACGTCATTT AATTCTGTGT
  GTGTGTGTGT GTGTGTGTAT GTGGATGTCA GAAGTCAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37784811	NES09116632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609282					SNP	A	A	A	A	C	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784811	NES09116632	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547130 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	742 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	32 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1920 bp downstream
Tssr40106	transcription start site region 40106	1889 bp downstream
Tssr40107	transcription start site region 40107	1837 bp downstream
Tssr40108	transcription start site region 40108	775 bp downstream
Tssr40109	transcription start site region 40109	740 bp downstream
Tssr40110	transcription start site region 40110	717 bp downstream
Tssr40111	transcription start site region 40111	1506 bp upstream
Tssr40112	transcription start site region 40112	1534 bp upstream
Tssr40113	transcription start site region 40113	1563 bp upstream
Tssr40114	transcription start site region 40114	1885 bp upstream
Tssr40115	transcription start site region 40115	1919 bp upstream
Tssr40116	transcription start site region 40116	1959 bp upstream
Tssr44369	transcription start site region 44369	1922 bp upstream
Tssr44370	transcription start site region 44370	1882 bp upstream
Tssr44371	transcription start site region 44371	1851 bp upstream
Tssr44372	transcription start site region 44372	1820 bp upstream
Tssr44373	transcription start site region 44373	1533 bp upstream
Tssr44374	transcription start site region 44374	687 bp upstream
Tssr44375	transcription start site region 44375	454 bp upstream
Tssr44376	transcription start site region 44376	436 bp upstream
Tssr44377	transcription start site region 44377	165 bp downstream
Tssr44378	transcription start site region 44378	284 bp downstream
Tssr44379	transcription start site region 44379	1533 bp downstream
Tssr44380	transcription start site region 44380	1545 bp downstream
Tssr44381	transcription start site region 44381	1901 bp downstream
Tssr44382	transcription start site region 44382	1920 bp downstream
Tssr44383	transcription start site region 44383	1971 bp downstream