rs27609283 SNP Detail

Summary

• ID
  rs27609283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCGGAAG GAGAGTTTCT
  GGTTTCTTCC AGGCTCCACA CGGCCTTGAT CTAGAATGTT CCTGACATCT AGCTATGTGT
  CTGCCCTTGG CTTAGAATTC CTCTTTTTGC GGGGCTAGTT CCACAGGTTT CTCTTACTTT
  CCTATGAGAA AGAGCTGTCG AGAGCTGGAA AAATACTCCG GGGTCAGGGT AGTTTTCCTC
  W
  TGACCCAAGT GACATTGTCT ACATCACTGC CATGGTTGGC CAGGATAAAC GTCATTTAAT
  TCTGTGTGTG TGTGTGTGTG TGTGTATGTG GATGTCAGAA GTCAACCTGT AGTGCACTGG
  TTCTCAACCT TCCTAATGCT GTGACTCTTT AATACATATA GTTCGTGTCC TGGTAACACC
  CAACCATGAA AATTATTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37784812	NES09116631	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T		A	A	A	A
ss147744270	ENSMUSSNP5263939	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27609283					SNP	A	A	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784812	NES09116631	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547123 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	735 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	39 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1913 bp downstream
Tssr40106	transcription start site region 40106	1882 bp downstream
Tssr40107	transcription start site region 40107	1830 bp downstream
Tssr40108	transcription start site region 40108	768 bp downstream
Tssr40109	transcription start site region 40109	733 bp downstream
Tssr40110	transcription start site region 40110	710 bp downstream
Tssr40111	transcription start site region 40111	1513 bp upstream
Tssr40112	transcription start site region 40112	1541 bp upstream
Tssr40113	transcription start site region 40113	1570 bp upstream
Tssr40114	transcription start site region 40114	1892 bp upstream
Tssr40115	transcription start site region 40115	1926 bp upstream
Tssr40116	transcription start site region 40116	1966 bp upstream
Tssr44369	transcription start site region 44369	1915 bp upstream
Tssr44370	transcription start site region 44370	1875 bp upstream
Tssr44371	transcription start site region 44371	1844 bp upstream
Tssr44372	transcription start site region 44372	1813 bp upstream
Tssr44373	transcription start site region 44373	1526 bp upstream
Tssr44374	transcription start site region 44374	680 bp upstream
Tssr44375	transcription start site region 44375	447 bp upstream
Tssr44376	transcription start site region 44376	429 bp upstream
Tssr44377	transcription start site region 44377	172 bp downstream
Tssr44378	transcription start site region 44378	291 bp downstream
Tssr44379	transcription start site region 44379	1540 bp downstream
Tssr44380	transcription start site region 44380	1552 bp downstream
Tssr44381	transcription start site region 44381	1908 bp downstream
Tssr44382	transcription start site region 44382	1927 bp downstream
Tssr44383	transcription start site region 44383	1978 bp downstream