rs27609284 SNP Detail

Summary

• ID
  rs27609284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTGCCCTT GGCTTAGAAT TCCTCTTTTT GCGGGGCTAG
  TTCCACAGGT TTCTCTTACT TTCCTATGAG AAAGAGCTGT CGAGAGCTGG AAAAATACTC
  Y
  GGGGTCAGGG TAGTTTTCCT CATGACCCAA GTGACATTGT CTACATCACT GCCATGGTTG
  GCCAGGATAA ACGTCATTTA ATTCTGTGTG TGTGTGTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37784813	NES09116630	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	C	C	T
ss147744265	ENSMUSSNP3022790	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27609284					SNP	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784813	NES09116630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547101 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	713 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	61 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1891 bp downstream
Tssr40106	transcription start site region 40106	1860 bp downstream
Tssr40107	transcription start site region 40107	1808 bp downstream
Tssr40108	transcription start site region 40108	746 bp downstream
Tssr40109	transcription start site region 40109	711 bp downstream
Tssr40110	transcription start site region 40110	688 bp downstream
Tssr40111	transcription start site region 40111	1535 bp upstream
Tssr40112	transcription start site region 40112	1563 bp upstream
Tssr40113	transcription start site region 40113	1592 bp upstream
Tssr40114	transcription start site region 40114	1914 bp upstream
Tssr40115	transcription start site region 40115	1948 bp upstream
Tssr40116	transcription start site region 40116	1988 bp upstream
Tssr44369	transcription start site region 44369	1893 bp upstream
Tssr44370	transcription start site region 44370	1853 bp upstream
Tssr44371	transcription start site region 44371	1822 bp upstream
Tssr44372	transcription start site region 44372	1791 bp upstream
Tssr44373	transcription start site region 44373	1504 bp upstream
Tssr44374	transcription start site region 44374	658 bp upstream
Tssr44375	transcription start site region 44375	425 bp upstream
Tssr44376	transcription start site region 44376	407 bp upstream
Tssr44377	transcription start site region 44377	194 bp downstream
Tssr44378	transcription start site region 44378	313 bp downstream
Tssr44379	transcription start site region 44379	1562 bp downstream
Tssr44380	transcription start site region 44380	1574 bp downstream
Tssr44381	transcription start site region 44381	1930 bp downstream
Tssr44382	transcription start site region 44382	1949 bp downstream
Tssr44383	transcription start site region 44383	2000 bp downstream