rs27609287 SNP Detail

Summary

• ID
  rs27609287
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGGGTGA GCATCTGACT
  CAACCCTAAA GCCAATGAGC TCCTTGCTCT GGGAGTCTGG CGTGGGCAGT GGCTGCCATT
  TTCTTTTGTT GGAGAAGGAT GAGGCAGAAA AGACTCGGAA GGAGAGTTTC TGGTTTCTTC
  CAGGCTCCAC ACGGCCTTGA TCTAGAATGT TCCTGACATC TAGCTATGTG TCTGCCCTTG
  S
  CTTAGAATTC CTCTTTTTGC GGGGCTAGTT CCACAGGTTT CTCTTACTTT CCTATGAGAA
  AGAGCTGTCG AGAGCTGGAA AAATACTCCG GGGTCAGGGT AGTTTTCCTC ATGACCCAAG
  TGACATTGTC TACATCACTG CCATGGTTGG CCAGGATAAA CGTCATTTAA TTCTGTGTGT
  GTGTGTGTGT GTGTGTATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37784816	NES09116627	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G		C	G	G		C
ss321390083	CHEV_4_141375616	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27609287					SNP	G	G	G	C	G	G	G	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784816	NES09116627	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547012 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	624 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	150 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Rr603893	regulatory region 603893	742 bp distal
Tssr40105	transcription start site region 40105	1802 bp downstream
Tssr40106	transcription start site region 40106	1771 bp downstream
Tssr40107	transcription start site region 40107	1719 bp downstream
Tssr40108	transcription start site region 40108	657 bp downstream
Tssr40109	transcription start site region 40109	622 bp downstream
Tssr40110	transcription start site region 40110	599 bp downstream
Tssr40111	transcription start site region 40111	1624 bp upstream
Tssr40112	transcription start site region 40112	1652 bp upstream
Tssr40113	transcription start site region 40113	1681 bp upstream
Tssr44369	transcription start site region 44369	1804 bp upstream
Tssr44370	transcription start site region 44370	1764 bp upstream
Tssr44371	transcription start site region 44371	1733 bp upstream
Tssr44372	transcription start site region 44372	1702 bp upstream
Tssr44373	transcription start site region 44373	1415 bp upstream
Tssr44374	transcription start site region 44374	569 bp upstream
Tssr44375	transcription start site region 44375	336 bp upstream
Tssr44376	transcription start site region 44376	318 bp upstream
Tssr44377	transcription start site region 44377	283 bp downstream
Tssr44378	transcription start site region 44378	402 bp downstream
Tssr44379	transcription start site region 44379	1651 bp downstream
Tssr44380	transcription start site region 44380	1663 bp downstream