rs27609288 SNP Detail

Summary

• ID
  rs27609288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTGTGTCC TCAGTTGATT GGTTGGTGGT CTGGCTACTT
  ACTGGTGATT GGTTCGGGGT GAGCATCTGA CTCAACCCTA AAGCCAATGA GCTCCTTGCT
  Y
  TGGGAGTCTG GCGTGGGCAG TGGCTGCCAT TTTCTTTTGT TGGAGAAGGA TGAGGCAGAA
  AAGACTCGGA AGGAGAGTTT CTGGTTTCTT CCAGGCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37784817	NES09116626	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	C	C	C	C	T	C
ss147744255	ENSMUSSNP6960435	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609288					SNP	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784817	NES09116626	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546860 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	472 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	302 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1650 bp downstream
Tssr40106	transcription start site region 40106	1619 bp downstream
Tssr40107	transcription start site region 40107	1567 bp downstream
Tssr40108	transcription start site region 40108	505 bp downstream
Tssr40109	transcription start site region 40109	470 bp downstream
Tssr40110	transcription start site region 40110	447 bp downstream
Tssr40111	transcription start site region 40111	1776 bp upstream
Tssr40112	transcription start site region 40112	1804 bp upstream
Tssr40113	transcription start site region 40113	1833 bp upstream
Tssr44369	transcription start site region 44369	1652 bp upstream
Tssr44370	transcription start site region 44370	1612 bp upstream
Tssr44371	transcription start site region 44371	1581 bp upstream
Tssr44372	transcription start site region 44372	1550 bp upstream
Tssr44373	transcription start site region 44373	1263 bp upstream
Tssr44374	transcription start site region 44374	417 bp upstream
Tssr44375	transcription start site region 44375	184 bp upstream
Tssr44376	transcription start site region 44376	166 bp upstream
Tssr44377	transcription start site region 44377	435 bp downstream
Tssr44378	transcription start site region 44378	554 bp downstream
Tssr44379	transcription start site region 44379	1803 bp downstream
Tssr44380	transcription start site region 44380	1815 bp downstream