rs27609289 SNP Detail

Summary

• ID
  rs27609289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATGAGAA GGAGAAGCGT
  TGCTGCTGTG TCTTCTGTCG ACCCCTCCCT TTCCGGTCCA GGTGACCCTG TCCCTTCCAC
  AAGGTTGCTG AATTTGGCCA GGTTAGTTTG CATTGTGTCC TCAGTTGATT GGTTGGTGGT
  CTGGCTACTT ACTGGTGATT GGTTCGGGGT GAGCATCTGA CTCAACCCTA AAGCCAATGA
  R
  CTCCTTGCTC TGGGAGTCTG GCGTGGGCAG TGGCTGCCAT TTTCTTTTGT TGGAGAAGGA
  TGAGGCAGAA AAGACTCGGA AGGAGAGTTT CTGGTTTCTT CCAGGCTCCA CACGGCCTTG
  ATCTAGAATG TTCCTGACAT CTAGCTATGT GTCTGCCCTT GGCTTAGAAT TCCTCTTTTT
  GCGGGGCTAG TTCCACAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37784818	NES09116625	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609289					SNP	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784818	NES09116625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546850 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	462 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	312 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1640 bp downstream
Tssr40106	transcription start site region 40106	1609 bp downstream
Tssr40107	transcription start site region 40107	1557 bp downstream
Tssr40108	transcription start site region 40108	495 bp downstream
Tssr40109	transcription start site region 40109	460 bp downstream
Tssr40110	transcription start site region 40110	437 bp downstream
Tssr40111	transcription start site region 40111	1786 bp upstream
Tssr40112	transcription start site region 40112	1814 bp upstream
Tssr40113	transcription start site region 40113	1843 bp upstream
Tssr44369	transcription start site region 44369	1642 bp upstream
Tssr44370	transcription start site region 44370	1602 bp upstream
Tssr44371	transcription start site region 44371	1571 bp upstream
Tssr44372	transcription start site region 44372	1540 bp upstream
Tssr44373	transcription start site region 44373	1253 bp upstream
Tssr44374	transcription start site region 44374	407 bp upstream
Tssr44375	transcription start site region 44375	174 bp upstream
Tssr44376	transcription start site region 44376	156 bp upstream
Tssr44377	transcription start site region 44377	445 bp downstream
Tssr44378	transcription start site region 44378	564 bp downstream
Tssr44379	transcription start site region 44379	1813 bp downstream
Tssr44380	transcription start site region 44380	1825 bp downstream