rs27609290 SNP Detail

Summary

• ID
  rs27609290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAATTTGG CCAGGTTAGT TTGCATTGTG TCCTCAGTTG
  ATTGGTTGGT GGTCTGGCTA CTTACTGGTG ATTGGTTCGG GGTGAGCATC TGACTCAACC
  Y
  TAAAGCCAAT GAGCTCCTTG CTCTGGGAGT CTGGCGTGGG CAGTGGCTGC CATTTTCTTT
  TGTTGGAGAA GGATGAGGCA GAAAAGACTC GGAAGGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37784819	NES09116624	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	T	C	C		T	C	C	T		T
ss147744251	ENSMUSSNP1757654	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss321390078	CHEV_4_141375441	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27609290					SNP	C	C	C	C	C	T	T	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784819	NES09116624	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546837 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	449 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	325 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Rr603893	regulatory region 603893	567 bp distal
Tssr40105	transcription start site region 40105	1627 bp downstream
Tssr40106	transcription start site region 40106	1596 bp downstream
Tssr40107	transcription start site region 40107	1544 bp downstream
Tssr40108	transcription start site region 40108	482 bp downstream
Tssr40109	transcription start site region 40109	447 bp downstream
Tssr40110	transcription start site region 40110	424 bp downstream
Tssr40111	transcription start site region 40111	1799 bp upstream
Tssr40112	transcription start site region 40112	1827 bp upstream
Tssr40113	transcription start site region 40113	1856 bp upstream
Tssr44369	transcription start site region 44369	1629 bp upstream
Tssr44370	transcription start site region 44370	1589 bp upstream
Tssr44371	transcription start site region 44371	1558 bp upstream
Tssr44372	transcription start site region 44372	1527 bp upstream
Tssr44373	transcription start site region 44373	1240 bp upstream
Tssr44374	transcription start site region 44374	394 bp upstream
Tssr44375	transcription start site region 44375	161 bp upstream
Tssr44376	transcription start site region 44376	143 bp upstream
Tssr44377	transcription start site region 44377	458 bp downstream
Tssr44378	transcription start site region 44378	577 bp downstream
Tssr44379	transcription start site region 44379	1826 bp downstream
Tssr44380	transcription start site region 44380	1838 bp downstream