rs27609292 SNP Detail

Summary

• ID
  rs27609292
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAGGGGT ATGAGAAGGA GAAGCGTTGC TGCTGTGTCT
  TCTGTCGACC CCTCCCTTTC CGGTCCAGGT GACCCTGTCC CTTCCACAAG GTTGCTGAAT
  K
  TGGCCAGGTT AGTTTGCATT GTGTCCTCAG TTGATTGGTT GGTGGTCTGG CTACTTACTG
  GTGATTGGTT CGGGGTGAGC ATCTGACTCA ACCCTAAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37784821	NES09116622	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	G	G	T	T	G	T	T	G	G
ss147744240	ENSMUSSNP746900	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27609292					SNP	T	T	T	T	T	G	G	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37784821	NES09116622	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546743 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	355 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	419 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1533 bp downstream
Tssr40106	transcription start site region 40106	1502 bp downstream
Tssr40107	transcription start site region 40107	1450 bp downstream
Tssr40108	transcription start site region 40108	388 bp downstream
Tssr40109	transcription start site region 40109	353 bp downstream
Tssr40110	transcription start site region 40110	330 bp downstream
Tssr40111	transcription start site region 40111	1893 bp upstream
Tssr40112	transcription start site region 40112	1921 bp upstream
Tssr40113	transcription start site region 40113	1950 bp upstream
Tssr44369	transcription start site region 44369	1535 bp upstream
Tssr44370	transcription start site region 44370	1495 bp upstream
Tssr44371	transcription start site region 44371	1464 bp upstream
Tssr44372	transcription start site region 44372	1433 bp upstream
Tssr44373	transcription start site region 44373	1146 bp upstream
Tssr44374	transcription start site region 44374	300 bp upstream
Tssr44375	transcription start site region 44375	67 bp upstream
Tssr44376	transcription start site region 44376	49 bp upstream
Tssr44377	transcription start site region 44377	552 bp downstream
Tssr44378	transcription start site region 44378	671 bp downstream
Tssr44379	transcription start site region 44379	1920 bp downstream
Tssr44380	transcription start site region 44380	1932 bp downstream