rs27615319 SNP Detail

Summary

• ID
  rs27615319
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173109040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATTGCA GCCCCTGAGT
  CGGGGGCAGC CCACCCTGGA AGGGGAGCCT GATTCAAGAG AATTGTCTCT TCTACCTGTC
  TCCCGCTCCC AGGCAGAGTC CCACTTAGCA TCGACGCCTA CACCCCCATG CCGTTCACCG
  AATGCTTGCT TCTCACTGAA GAGCTTCACG GATAACTTCT CTAATAATCA CTTCAGCACA
  S
  GAACTAGGAG GCTCTCAGAA CAGCAAGAGC TACAGCAAGG TGGGCTGAGC TTACCAAAGA
  TCCCATGGTT TGAGACTGCC AGAGCCAGAT AGATCCCTTA GGGACCTTTC TGTTTGGTGG
  GACACAGTTT GGTGGGACAC TTTTTGGTAG GACTGTTTGG TGGGACACTG CTTGGTGGGA
  CATGGTTTGG TGGGACACTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824541	NES08702899	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G	G	G		G	G	G	G		G	C	G		G
ss45210349	mCV23267302	ABI	CRAMUS_MOUSE	f	SNP		C	C					G		G
ss148331748	ENSMUSSNP1262247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							G
ss320622165	CHEV_2_173092748	CHEVERUD	SCREENING_POP	f	SNP													C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615319					SNP	C	C	C	C	G	G	G	G	G	G	G	G	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824541	NES08702899	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173109040 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1637 bp distal
Rr571917	regulatory region 571917	95 bp distal
Tssr27982	transcription start site region 27982	1308 bp upstream