rs27615321 SNP Detail

Summary

• ID
  rs27615321
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173108757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTGAGG GTTTCAGGTT
  TGGGGAGCCT CTTCCCCTTC CCCCTAAAAT TCTGTAGGCG AGCAGGCAGC CACCCGGTGT
  GTAGAGGAAG TCAGAACTTC CATTCGGAGT CTTAGCAAGT CCAGACAGCG AGGCAGAACT
  CAGCCCTTCT TTGGCTGGAA GGCTAAGACA CACCCACCAA CCCCATAGGA GGCGGTTTAG
  M
  TCAAAGCCTC ATAGAAACGG GGTCTCCAAC AAGTCACCCC ACGGGATGAG GTTGGGAACT
  CACGAGAAAG CCTTTGCGGT CTGTTTATTG CAGCCCCTGA GTCGGGGGCA GCCCACCCTG
  GAAGGGGAGC CTGATTCAAG AGAATTGTCT CTTCTACCTG TCTCCCGCTC CCAGGCAGAG
  TCCCACTTAG CATCGACGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824543	NES08702897	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C	C	C		C	C	C	C		C	C	A	C		C
ss45335681	mCV23267573	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					C		C
ss148331738	ENSMUSSNP7060871	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C
ss320622162	CHEV_2_173092465	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615321					SNP	A	A	A	A	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824543	NES08702897	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173108757 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1354 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr22050	transcription start site region 22050	1907 bp downstream
Tssr27982	transcription start site region 27982	1025 bp upstream