rs27615322 SNP Detail

Summary

• ID
  rs27615322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173108711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCAGG GAGCTGGGAA
  CTTGCAAAAC GGGGGTGCGT GTGCTCATTC CTGAGGGTTT CAGGTTTGGG GAGCCTCTTC
  CCCTTCCCCC TAAAATTCTG TAGGCGAGCA GGCAGCCACC CGGTGTGTAG AGGAAGTCAG
  AACTTCCATT CGGAGTCTTA GCAAGTCCAG ACAGCGAGGC AGAACTCAGC CCTTCTTTGG
  Y
  TGGAAGGCTA AGACACACCC ACCAACCCCA TAGGAGGCGG TTTAGCTCAA AGCCTCATAG
  AAACGGGGTC TCCAACAAGT CACCCCACGG GATGAGGTTG GGAACTCACG AGAAAGCCTT
  TGCGGTCTGT TTATTGCAGC CCCTGAGTCG GGGGCAGCCC ACCCTGGAAG GGGAGCCTGA
  TTCAAGAGAA TTGTCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824544	NES08702896	PERLEGEN	MM_PANEL2	f	SNP	T			C		T	C	C		T	T		C
ss45326049	mCV23267574	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		C		C
ss148331734	ENSMUSSNP432765	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss320622161	CHEV_2_173092419	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615322					SNP	T	T	T	C	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824544	NES08702896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173108711 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1308 bp distal
Rr571916	regulatory region 571916	1963 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr22050	transcription start site region 22050	1861 bp downstream
Tssr27982	transcription start site region 27982	979 bp upstream