rs27615323 SNP Detail

Summary

• ID
  rs27615323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173108631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATTCAT ACGTTCGCAG
  AATTATTACC GACTAAATTG TTTGTGGAAA GGCAATTAGA GCCATGACCA GATGAAGCTC
  ACCAGCCAGG GAGCTGGGAA CTTGCAAAAC GGGGGTGCGT GTGCTCATTC CTGAGGGTTT
  CAGGTTTGGG GAGCCTCTTC CCCTTCCCCC TAAAATTCTG TAGGCGAGCA GGCAGCCACC
  Y
  GGTGTGTAGA GGAAGTCAGA ACTTCCATTC GGAGTCTTAG CAAGTCCAGA CAGCGAGGCA
  GAACTCAGCC CTTCTTTGGC TGGAAGGCTA AGACACACCC ACCAACCCCA TAGGAGGCGG
  TTTAGCTCAA AGCCTCATAG AAACGGGGTC TCCAACAAGT CACCCCACGG GATGAGGTTG
  GGAACTCACG AGAAAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824545	NES08702895	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss320622160	CHEV_2_173092339	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615323					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824545	NES08702895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173108631 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1228 bp distal
Rr571916	regulatory region 571916	1883 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr22050	transcription start site region 22050	1781 bp downstream
Tssr27982	transcription start site region 27982	899 bp upstream