rs27615325 SNP Detail

Summary

• ID
  rs27615325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173108426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGGCCA CTGAGCTGGG
  ACCCCGACAT GAATCACTGG TGGCTCACGA GGACTGCATT CCCAAGTGAC TGGACGATAA
  GGAGGCGGCG CAGACACCAA TAAATGATTC ACGCCTTCCG CAAGACCAAA CCTTTGGCTT
  TTACAGACAC CGCTTACAAA GTAGAAAGGA AAGAACAAAG AAATTACTCA GGCTGTTTGC
  R
  CAAAGTTGAT TCATACGTTC GCAGAATTAT TACCGACTAA ATTGTTTGTG GAAAGGCAAT
  TAGAGCCATG ACCAGATGAA GCTCACCAGC CAGGGAGCTG GGAACTTGCA AAACGGGGGT
  GCGTGTGCTC ATTCCTGAGG GTTTCAGGTT TGGGGAGCCT CTTCCCCTTC CCCCTAAAAT
  TCTGTAGGCG AGCAGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824547	NES08702893	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	G		G	G	G	G		G	G	A	G		G
ss45257452	mCV23267575	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		G
ss148331731	ENSMUSSNP2506267	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss320622158	CHEV_2_173092134	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615325					SNP	A	A	A	A	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824547	NES08702893	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173108426 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1023 bp distal
Rr571916	regulatory region 571916	1678 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr22050	transcription start site region 22050	1576 bp downstream
Tssr27982	transcription start site region 27982	694 bp upstream