rs27615327 SNP Detail

Summary

• ID
  rs27615327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173107826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCCTGGC CTAGGAACTG
  GAGACTTGAT AATATATACT GCAGAGTGGG CAACCCTACA GGGAGCTGTG CTGGCGAGGA
  ATCCTAAGAG GAGGTCAGCC AAGAGGAAAA AAAAAAAAAA ATCACACAGG AAGGGAAAAA
  CTCAGGTAAT TATCAACCCT TGGATCTGAA CTTACTTTTG GAGCCTCGAC TCAGGGCCAC
  R
  GGAAGCTGGC TGTATAATTA CACCTCCGGG CCACGTGGCA AGCAGCTCTA ATTGCTTCCA
  AGATGGCACC AAAGCGACCA TTTTAATCTA GAGGCCCAAA GCAGCTAGTA AAATTAGGCA
  GCTATAATAC CACATGCAAA TTCATATGCC CAACAGCAGG GCAAGACCCC AGCGCAGGGT
  ACGCCTGGTA CTTATCGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37824549	NES08702891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615327					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824549	NES08702891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173107826 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	423 bp distal
Rr571916	regulatory region 571916	1078 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr22050	transcription start site region 22050	976 bp downstream
Tssr27982	transcription start site region 27982	94 bp upstream