rs27615331 SNP Detail

Summary

• ID
  rs27615331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173107476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCAGAG GGCCTGGTGC
  CTTCTAGTGG GAACAATCCC TCTCCCTGTC AGTGCTCCAT AGCCTCTACA GCTCTACACC
  GCCCTGGAGC GCCACAAGTC AACCAGTGCT CCAACCCACT CCGAACACAC CAGGAACACC
  ACTTGGGTAA GGATCCGAGC CCAGCAAGAG GATGCTGCAA TCGATTAGCA ATGTCTGACA
  Y
  GAGCAGCAAG TGGAGTACTT AATCGAATGG CGGGCATTAT TAGACAGCCC CAATCTATAG
  TTTGAAAGTC ACAAGGCGGG TCAATAAAGT CACCAGCAAG TCTTCAAGCG AACTTTCTTG
  TGCGCCAGGC CAGATACTGC CACATGCTCC GTGCCTGGCC TAGGAACTGG AGACTTGATA
  ATATATACTG CAGAGTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37824553	NES08702887	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C		T	C	C	C		T	C	C	T		C
ss45263704	mCV23267585	ABI	CRAMUS_MOUSE	f	SNP	T	T						C		C
ss148331725	ENSMUSSNP7177054	ENSEMBL	ENSEMBL_Sanger	f	SNP										C
ss320622155	CHEV_2_173091184	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27615331					SNP	T	T	T	T	C	C	C	C	T	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824553	NES08702887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173107476 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	73 bp distal
Rr571916	regulatory region 571916	728 bp distal
Rr571917	regulatory region 571917	83 bp proximal
Tssr22050	transcription start site region 22050	626 bp downstream
Tssr27982	transcription start site region 27982	251 bp downstream