rs27615332 SNP Detail

Summary

• ID
  rs27615332
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173106831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTGGGCA AGCTAAGCCC
  ACACTCCAGG ATCCCTCAGC CCAAGTTCAA ATCTGCCTTG CAACTGTGTG CTGAGTGATC
  TTTGGCAAGT GACTTGGCTC CGCCTCCTCG TGTGCACTGA GGTTGCCATG AGGATTAATG
  AGGCGGGGCG TGCCAAGCGC GCTGTGAGCA CCTGCCACTG CTAGGGTTTA AAAAGCCACC
  V
  CTCGCTGTGG GGGAGTGCCC AGAACAACCT CCAAGCAGAC AGAGCTGTGA GGTGTCAGTC
  AGGACCAAAT CTCCCCCCTT CTGCTCTTAT TTCTGAAGCA TCTCTATTCC AGAGAAAAGC
  CCCCGTGTTT TCCTCTAGAG TATAAAGGTG CTGAGGCTAC AACTCAAGAC ATCTGTGGAA
  GAAGCAGGCA AGATAAAACA                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37824554	NES08702886	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A		A		A
ss320622153	CHEV_2_173090539	CHEVERUD	SCREENING_POP	f	SNP								A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27615332					SNP	A	A	A	A	G	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824554	NES08702886	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173106831 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	83 bp distal
Rr571917	regulatory region 571917	728 bp proximal
Tssr22050	transcription start site region 22050	12 bp upstream
Tssr27982	transcription start site region 27982	896 bp downstream