rs27615333 SNP Detail

Summary

• ID
  rs27615333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173106571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTTTTC CTTCAGTTGC
  AACCCAACAC CAGACCGTTC CTGTTCTCTC CTGCTCAGAG CCATGGGGAT CACTGCCCGC
  TGGCCCGGTG ACCCTTCTTG GAAGGGCGTG GCAGAAGGGG AAGGCTTCCC AGCCGGCCAA
  AAGGGATACA CACACACACA CAGAGACCCA GCTGGAGAAG TCTGAGAGGC CAGAGGTGGA
  R
  AGAGGCCTCA AATCAGACAC ACCCCTGACA CCATGACAGG TGGCTCTAAG GCTTGGCTCT
  GCCTGGGCAA GCTAAGCCCA CACTCCAGGA TCCCTCAGCC CAAGTTCAAA TCTGCCTTGC
  AACTGTGTGC TGAGTGATCT TTGGCAAGTG ACTTGGCTCC GCCTCCTCGT GTGCACTGAG
  GTTGCCATGA GGATTAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37824555	NES08702951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27615333					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37824555	NES08702951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173106571 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	within coordinates
Rr571916	regulatory region 571916	156 bp proximal
Rr571917	regulatory region 571917	988 bp proximal
Tssr22050	transcription start site region 22050	272 bp upstream
Tssr27982	transcription start site region 27982	1156 bp downstream