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rs27615335 SNP Detail
Summary
  • ID
    rs27615335
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:173105938 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGACGACAGG CCCTGTCCTG
    TGAGTCTCCC AGGCTGAGAC CCAGCTGGAG GCCTTGGCCT GAGACATGAG GCTCAGACGC
    AGGTTGCAAA GTGCCTCTCA TCTGGAATTC TACTGAGCCC ATTCCCTGGG GGCCCAGCCT
    GGTCCAGGCA GCTCTTCTGC TGAACTGGCT GCTCCTTGGG TTACCCACAT TCCAGTACTG
    Y
    GGTCTCAAAG TCACCAGGCC ATGTCAAAGG GCTGACAAGC CAGGGGCTGT GTGTAGGACC
    ACAGAACCCA CAGCACATCG GCTTCTGGGG ATGGGCGGGG GTTGGTTGGG GGGGAGGCTT
    GAGAGACACG AAATCTGCAG AACTTAATGA CTTAGGGTGG AGAGGCTCAG GCTGCAACCC
    TTGTTGTCCC TTACCTCACC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37824558 NES08702948 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27615335 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37824558 NES08702948 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:173105938 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pmepa1 prostate transmembrane protein, androgen induced 1 Intron
Rr571914 regulatory region 571914 1914 bp distal
Rr571915 regulatory region 571915 within coordinates
Rr571916 regulatory region 571916 789 bp proximal
Rr571917 regulatory region 571917 1621 bp proximal
Tssr22050 transcription start site region 22050 905 bp upstream
Tssr27982 transcription start site region 27982 1789 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory